Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2121KEGG: gdi:GDI0861 putative major royal jelly-like protein. (379 aa)    
Predicted Functional Partners:
Bind_2120
PFAM: protein of unknown function DUF336; KEGG: gox:GOX0922 hypothetical protein.
 
     0.800
Bind_1997
KEGG: gdi:GDI0596 hypothetical protein.
  
     0.765
Bind_2151
PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC.
  
     0.697
Bind_1732
KEGG: gdi:GDI3686 hypothetical protein.
  
     0.661
Bind_1305
KEGG: gdi:GDI0324 hypothetical protein.
 
     0.598
Bind_3256
KEGG: gox:GOX0013 hypothetical protein.
  
     0.583
Bind_2119
PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A0872 putative transport transmembrane protein.
       0.582
Bind_0118
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.571
Bind_3661
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.569
Bind_3202
Gluconate 2-dehydrogenase (acceptor); PFAM: glucose-methanol-choline oxidoreductase; KEGG: bbt:BBta_1705 putative oxidoreductase, GMC family.
   
 
 0.530
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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