STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2147PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: zmo:ZMO1807 TonB-dependent receptor. (760 aa)    
Predicted Functional Partners:
Bind_2144
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.635
Bind_3305
TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA4387 possible ferrichrome-iron receptor.
 
  
 0.593
Bind_3388
KEGG: zmo:ZMO1458 hypothetical protein.
  
     0.572
Bind_2145
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gbe:GbCGDNIH1_1104 TolR protein.
  
  
 0.568
Bind_2146
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA0154 possible MotA/TolQ/ExbB proton channel family.
  
  
 0.532
Bind_2143
PFAM: phosphoesterase PA-phosphatase related; KEGG: mlo:mll2704 probable acid phosphatase.
 
   
 0.511
Bind_1167
KEGG: nha:Nham_1869 hypothetical protein.
  
  
 0.477
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.463
Bind_2148
PFAM: protein of unknown function DUF81; KEGG: mfa:Mfla_1552 protein of unknown function DUF81.
       0.423
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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