STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2149PFAM: acyltransferase 3; KEGG: bxe:Bxe_B0486 hypothetical protein. (388 aa)    
Predicted Functional Partners:
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
 
  
 0.519
Bind_0592
KEGG: ana:alr0587 unknown protein.
 
     0.518
Bind_0014
PFAM: phosphoesterase; KEGG: aba:Acid345_2127 phosphoesterase.
  
     0.489
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
  
     0.454
Bind_2400
Periplasmic protein-like protein; KEGG: bbt:BBta_5203 hypothetical protein.
  
     0.434
Bind_1105
Putative transmembrane anti-sigma factor; KEGG: bbr:BB1303 hypothetical protein.
  
     0.430
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
  
    0.428
Bind_3161
PFAM: nuclease (SNase domain protein); KEGG: bja:blr0145 hypothetical protein.
  
  
 0.411
Bind_1612
TIGRFAM: acid phosphatase; PFAM: phosphoesterase; KEGG: rle:pRL110285 putative acid phosphatase.
  
     0.404
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.