Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2160Hypothetical protein. (48 aa)    
Predicted Functional Partners:
Bind_2158
PFAM: CutA1 divalent ion tolerance protein; KEGG: shn:Shewana3_3575 CutA1 divalent ion tolerance protein.
       0.509
Bind_2159
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: rpd:RPD_3379 peptidase M24.
       0.509
Bind_2161
Hypothetical protein.
       0.412
Bind_2162
PFAM: Radical SAM domain protein; KEGG: sus:Acid_4134 radical SAM domain protein.
       0.412
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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