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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2193PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein. (251 aa)    
Predicted Functional Partners:
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.773
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.764
Bind_2171
KEGG: mlo:mll5084 hypothetical protein.
  
     0.762
Bind_1789
KEGG: mex:Mext_4236 hypothetical protein.
  
     0.761
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.757
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.753
Bind_0715
PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein.
  
     0.753
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
     0.753
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.753
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.749
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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