Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2195PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein. (215 aa)    
Predicted Functional Partners:
Bind_2194
PFAM: extracellular solute-binding protein family 5; KEGG: bov:BOV_A0542 peptide ABC transporter, periplasmic peptide-binding protein.
       0.506
Bind_2136
TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: swi:Swit_2241 arsenate resistance ArsH.
  
    0.480
Bind_0410
PFAM: globin; KEGG: bra:BRADO5406 putative hemoglobin protein (truncated hemoglobin).
  
  
 0.453
Bind_2331
KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein.
  
  
 0.453
Bind_0758
KEGG: bja:blr1340 hypothetical protein.
  
  
 0.408
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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