Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_2246PFAM: protein of unknown function DUF1328; KEGG: atc:AGR_L_805 hypothetical protein. (57 aa)    
Predicted Functional Partners:
Bind_2288
PFAM: CsbD family protein; KEGG: rpa:RPA4217 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.774
Bind_3206
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nar:Saro_3315 transport-associated.
  
    0.725
Bind_0240
PFAM: CsbD family protein; KEGG: bra:BRADO1086 conserved hypothetical protein, hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
    0.705
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.473
Bind_2248
KEGG: xau:Xaut_1487 hypothetical protein.
       0.473
Bind_0817
PFAM: acyltransferase 3; KEGG: bcz:BCZK5150 probable membrane protein.
   
    0.425
Bind_0316
KEGG: bbt:BBta_p0116 hypothetical protein.
  
    0.408
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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