Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2320PFAM: Fusaric acid resistance protein conserved region; KEGG: azc:AZC_1076 hypothetical protein. (713 aa)    
Predicted Functional Partners:
Bind_2322
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bov:BOV_A0706 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.951
Bind_2321
PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656.
 
   
 0.948
Bind_2319
PFAM: regulatory protein MarR; KEGG: bja:blr3851 transcriptional regulatory protein.
 
     0.862
Bind_1399
PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4754 secretion protein HlyD family protein.
 
  
 0.787
Bind_0135
PFAM: regulatory protein MarR; KEGG: bvi:Bcep1808_5466 transcriptional regulator, MarR family.
 
     0.713
Bind_0482
PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ.
  
    0.558
Bind_2860
PFAM: Carbohydrate-selective porin OprB; KEGG: psb:Psyr_1117 carbohydrate-selective porin OprB.
  
     0.520
Bind_2838
PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein.
  
     0.519
Bind_3070
PFAM: Carbohydrate-selective porin OprB; KEGG: rso:RSp1632 putative porin B precursor outer (glucose porin) transmembrane protein.
  
     0.519
Bind_1513
PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0831 hypothetical protein.
  
     0.480
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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