Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2327TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor. (790 aa)    
Predicted Functional Partners:
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.935
Bind_2326
PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein.
     
 0.793
Bind_0859
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0746 TonB-dependent siderophore receptor.
 
  
 0.786
Bind_0847
PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mes:Meso_2581 condensation domain.
  
  
 0.771
Bind_1183
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX2077 ferric siderophore receptor.
 
  
 0.752
Bind_0549
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nar:Saro_1708 TonB-dependent receptor.
  
  
 0.715
Bind_2555
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pae:PA2335 probable TonB-dependent receptor.
  
  
 0.684
Bind_0842
KEGG: ava:Ava_1124 hypothetical protein.
  
     0.640
Bind_2328
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_0955 ABC transporter related.
 
  
 0.619
Bind_3445
KEGG: swi:Swit_3661 hypothetical protein.
  
     0.610
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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