STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2330PFAM: periplasmic binding protein; KEGG: sfu:Sfum_3702 periplasmic binding protein. (372 aa)    
Predicted Functional Partners:
Bind_2329
PFAM: transport system permease protein; KEGG: nha:Nham_0954 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.981
Bind_2328
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_0955 ABC transporter related.
 
 
 0.979
Bind_2005
PFAM: transport system permease protein; KEGG: gdi:GDI2312 putative ABC-type Fe3+ transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.919
Bind_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gdi:GDI2311 putative ABC-type Fe3+ transport system ATP-binding component.
 
 
 0.909
Bind_0369
PFAM: TonB-dependent receptor; KEGG: azo:azo3844 putative TonB-dependent receptor.
 
  
 0.704
Bind_2970
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA0153 possible outer membrane receptor for Fe transport.
 
  
 0.603
Bind_2075
KEGG: sat:SYN_00840 hypothetical cytosolic protein.
 
     0.509
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.504
Bind_2331
KEGG: mca:MCA1565 protozoan/cyanobacterial globin family protein.
       0.490
Bind_1903
PFAM: TOBE domain protein; KEGG: rpa:RPA4719 molybdo-pterin binding protein.
 
     0.462
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.