Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_2356PFAM: Glutathione S-transferase domain; KEGG: mag:amb2655 glutathione S-transferase; Belongs to the GST superfamily. (231 aa)    
Predicted Functional Partners:
Bind_2357
PFAM: Glutathione S-transferase domain; KEGG: acr:Acry_3099 glutathione S-transferase, N-terminal domain.
     
 0.794
Bind_2355
PFAM: regulatory protein TetR; KEGG: acr:Acry_3101 transcriptional regulator, TetR family.
       0.773
Bind_0462
PFAM: Glutathione S-transferase domain; KEGG: scl:sce6962 probable glutathione S-transferase; Belongs to the GST superfamily.
 
   
 0.731
Bind_2358
Hypothetical protein.
       0.480
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.412
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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