Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2411PFAM: conserved hypothetical protein; KEGG: mes:Meso_1416 conserved hypothetical protein 1620. (363 aa)    
Predicted Functional Partners:
Bind_2410
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein.
 
  
 0.991
Bind_0324
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3409 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.731
Bind_3311
KEGG: sme:SMc02769 hypothetical protein.
  
     0.702
Bind_0731
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.696
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.685
Bind_0450
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.653
Bind_0453
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mex:Mext_0302 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.634
Bind_0715
PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein.
  
     0.621
Bind_2409
KEGG: mex:Mext_4626 hypothetical protein.
       0.616
Bind_3056
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_1194 ErfK/YbiS/YcfS/YnhG precursor.
  
     0.611
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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