Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_2451KEGG: nha:Nham_0878 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Bind_2452
KEGG: bja:blr3456 hypothetical protein.
 
     0.708
Bind_3031
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin).
     
 0.535
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.515
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.504
Bind_3214
KEGG: rpb:RPB_3326 hypothetical protein.
 
 
   0.465
Bind_2453
PFAM: phosphate acetyl/butaryl transferase; KEGG: bch:Bcen2424_4872 phosphate acetyltransferase.
       0.448
Bind_3570
Protein of unknown function DUF299; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
  
  
 0.447
Bind_0785
KEGG: bja:blr4318 hypothetical protein.
  
     0.437
Bind_3019
PFAM: PRC-barrel domain protein; KEGG: xau:Xaut_4137 PRC-barrel domain protein.
  
     0.435
Bind_2216
KEGG: nar:Saro_3404 hypothetical protein.
  
     0.429
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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