Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2462PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4217 putative mannitol transmembrane permease component of ABC transporter. (290 aa)    
Predicted Functional Partners:
Bind_2460
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: atc:AGR_L_3278 ATP-binding transport protein SmoK (POLK).
 
 0.999
Bind_2461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4216 putative mannitol transmembrane permease component of ABC transporter.
 
 0.999
Bind_2463
PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL4218 putative mannitol-binding component of ABC transporter.
 
 0.999
Bind_2519
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_0960 iron (III) ABC transporter, ATP-binding protein.
 
 
 0.962
Bind_2459
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: atc:AGR_L_830 mannitol 2-dehydrogenase (MDH).
 
  
 0.856
Bind_1720
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: atc:AGR_L_843 operon regulator.
 
   
 0.665
Bind_3014
KEGG: mex:Mext_2713 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
  
 0.599
Bind_2864
PFAM: ROK family protein; KEGG: rle:RL0488 putative ROK family transcriptional regulator.
 
   
 0.587
xylB-2
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ret:RHE_CH03649 xylulokinase protein.
 
   
 0.549
Bind_2866
PFAM: PfkB domain protein; KEGG: xau:Xaut_2416 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.543
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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