Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2480PFAM: integrase family protein; KEGG: xau:Xaut_4792 integrase family protein; Belongs to the 'phage' integrase family. (354 aa)    
Predicted Functional Partners:
Bind_2841
PFAM: protein of unknown function DUF1403; KEGG: nha:Nham_4582 protein of unknown function DUF1403.
 
     0.789
Bind_2479
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: xau:Xaut_0171 NADH ubiquinone oxidoreductase 20 kDa subunit.
       0.527
Bind_2478
NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rle:pRL110293 putative formate hydrogenlyase subunit 5 precursor.
       0.513
Bind_1140
PFAM: phosphoribosyltransferase; KEGG: nwi:Nwi_0385 phosphoribosyltransferase.
   
    0.485
Bind_2840
PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator.
 
     0.458
Bind_0308
PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_0393 arogenate dehydrogenase.
  
    0.451
Bind_2473
SMART: helix-turn-helix domain protein; KEGG: bja:bll6346 hypothetical protein.
     
 0.448
Bind_2022
PFAM: protein of unknown function DUF159; KEGG: rpd:RPD_1245 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
   
    0.435
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.413
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.403
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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