Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2491PFAM: fatty acid hydroxylase; KEGG: ret:RHE_CH02640 probable desaturase protein. (344 aa)    
Predicted Functional Partners:
Bind_2490
TIGRFAM: Rieske [2Fe-2S] domain protein, MocE subfamily; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sme:SMa2053 MocE-like protein.
 
     0.894
Bind_2492
PFAM: regulatory protein LacI; KEGG: sme:SMa2049 putative LacI-family transcription regulator.
 
     0.856
Bind_2487
KEGG: ret:RHE_CH02644 hypothetical protein.
 
     0.754
Bind_2767
PFAM: fatty acid desaturase; KEGG: mlo:mlr4998 putative hydrocarbon oxygenase MocD.
 
  
 0.737
Bind_2489
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH02642 rhizopine ABC transporter, substrate-binding protein.
 
     0.705
Bind_2766
PFAM: regulatory protein LacI; KEGG: rle:pRL110623 putative transcriptional regulator.
  
     0.650
Bind_2315
KEGG: atc:AGR_L_450 hypothetical protein.
  
     0.557
Bind_1012
KEGG: oan:Oant_3962 hypothetical protein.
  
     0.545
Bind_2488
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ret:RHE_CH02643 ferredoxin reductase protein.
 
   
 0.532
Bind_2771
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_2900 putative rhizopine-binding protein precursor.
  
     0.483
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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