Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Bind_2497KEGG: bbt:BBta_4248 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Bind_0771
PFAM: protein of unknown function DUF1321; KEGG: mex:Mext_2662 protein of unknown function DUF1321.
  
   
 0.784
Bind_0649
PFAM: DNA polymerase III chi subunit HolC; KEGG: mex:Mext_4656 DNA polymerase III chi subunit HolC.
  
     0.743
Bind_2174
TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB.
  
     0.711
Bind_0093
PFAM: protein of unknown function DUF1013; KEGG: azc:AZC_1470 hypothetical protein.
  
   
 0.693
Bind_0510
PFAM: protein of unknown function DUF1058; KEGG: azc:AZC_0237 hypothetical protein.
  
     0.679
Bind_2175
TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: pla:Plav_0138 double-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily.
  
     0.667
atpF1
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.651
Bind_3313
PFAM: Glutathione S-transferase domain; KEGG: mex:Mext_2386 glutathione S-transferase domain.
  
     0.623
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.620
Bind_3111
PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44.
  
     0.599
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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