Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2525KEGG: bch:Bcen2424_5953 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Bind_2523
TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sme:SMc00808 putative chromate transport protein.
   
 0.926
Bind_2527
KEGG: rme:Rmet_6198 hypothetical protein.
       0.718
Bind_2526
KEGG: nha:Nham_1872 hypothetical protein.
       0.701
Bind_0648
PFAM: Chromate transporter; KEGG: ccr:CC_1097 chromate transporter, putative.
 
   
 0.656
Bind_2524
KEGG: dvu:DVUA0094 ChrB protein.
 
    
0.628
Bind_1522
PFAM: Chromate transporter; KEGG: reu:Reut_A2355 chromate transporter.
 
   
 0.603
Bind_2528
PFAM: protein of unknown function LppY and LpqO; KEGG: aba:Acid345_3442 protein of unknown function LppY and LpqO.
 
     0.599
Bind_2529
PFAM: manganese and iron superoxide dismutase; KEGG: bja:bll7559 probable Fe/Mn superoxide dismutase.
     
 0.411
Bind_1735
PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ret:RHE_PE00049 adenylate cyclase protein.
  
     0.408
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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