Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2563PFAM: regulatory protein TetR; KEGG: sme:SMa1887 putative transcriptional regulator. (192 aa)    
Predicted Functional Partners:
Bind_2562
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sme:SMa1885 putative membrane efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.667
Bind_2561
PFAM: acriflavin resistance protein; KEGG: ret:RHE_CH00528 probable cation/multidrug efflux transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.645
Bind_2558
PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator.
 
     0.609
Bind_0187
PFAM: regulatory protein TetR; KEGG: mlo:mlr5353 transcriptional regulator.
  
     0.542
Bind_2560
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.505
Bind_0275
PFAM: regulatory protein TetR; KEGG: bam:Bamb_6109 transcriptional regulator, TetR family.
  
     0.463
Bind_2270
PFAM: regulatory protein TetR; KEGG: nwi:Nwi_3052 transcriptional regulatory protein, TetR family.
  
     0.445
Bind_0962
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B1606 transcriptional regulator, TetR family.
  
     0.402
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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