Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2578KEGG: bxe:Bxe_A1719 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Bind_2577
KEGG: bxe:Bxe_A1720 hypothetical protein.
 
     0.955
Bind_2579
KEGG: bxe:Bxe_A1722 predicted metal-dependent hydrolase.
 
     0.849
Bind_1317
PFAM: carboxyl transferase; KEGG: ret:RHE_CH02232 propionyl-CoA carboxylase beta chain protein.
  
  
 0.610
Bind_2580
PFAM: regulatory protein MerR; KEGG: cak:Caul_0483 DNA binding domain protein, excisionase family.
  
    0.571
Bind_2199
KEGG: mex:Mext_4794 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
     
 0.495
Bind_2916
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.478
Bind_2576
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1718 major facilitator superfamily (MFS) transporter.
       0.428
Bind_1318
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: azc:AZC_1774 propionyl-coenzyme A carboxylase alpha polypeptide.
  
  
 0.418
Bind_3578
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mex:Mext_1805 transcriptional coactivator/pterin dehydratase.
  
  
 0.410
Bind_2615
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: bxe:Bxe_A1772 putative esterase.
 
     0.400
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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