Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2579KEGG: bxe:Bxe_A1722 predicted metal-dependent hydrolase. (348 aa)    
Predicted Functional Partners:
Bind_2577
KEGG: bxe:Bxe_A1720 hypothetical protein.
 
     0.849
Bind_2578
KEGG: bxe:Bxe_A1719 hypothetical protein.
 
     0.849
Bind_1494
PFAM: Carboxymuconolactone decarboxylase; KEGG: mva:Mvan_0928 carboxymuconolactone decarboxylase.
 
     0.503
Bind_2265
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region.
  
    0.483
Bind_2945
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region.
  
    0.483
Bind_2580
PFAM: regulatory protein MerR; KEGG: cak:Caul_0483 DNA binding domain protein, excisionase family.
       0.467
Bind_0083
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: azc:AZC_0699 pyruvate decarboxylase.
 
     0.452
Bind_1310
TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpt:Bpet3236 2-haloalkanoic acid dehalogenase.
 
     0.420
Bind_2576
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1718 major facilitator superfamily (MFS) transporter.
       0.420
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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