Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2628KEGG: xau:Xaut_1352 extracellular ligand-binding receptor. (204 aa)    
Predicted Functional Partners:
Bind_0978
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: azc:AZC_4104 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.785
Bind_0977
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: azc:AZC_4105 putative branched-chain amino acid transport system permease protein.
  
  
 0.725
Bind_1968
PFAM: response regulator receiver; ANTAR domain protein; KEGG: pat:Patl_2529 response regulator receiver and ANTAR domain protein.
  
 
 0.652
ureB
Urease, gamma subunit; KEGG: azc:AZC_1764 urease beta subunit; TIGRFAM: urease, beta subunit; urease, gamma subunit; PFAM: Urease beta subunit; Urease gamma subunit region; Belongs to the urease beta subunit family.
     
 0.525
Bind_2856
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: xau:Xaut_1067 peptidase S8 and S53 subtilisin kexin sedolisin.
  
     0.505
Bind_0980
KEGG: azc:AZC_4102 putative ABC transporter ATP-binding component; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.492
Bind_0544
PFAM: monooxygenase FAD-binding; KEGG: atc:AGR_L_226 hypothetical protein.
   
  
 0.489
Bind_0923
PFAM: monooxygenase FAD-binding; KEGG: nha:Nham_2584 monooxygenase, FAD-binding.
   
  
 0.489
Bind_3031
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin).
     
 0.458
Bind_0675
KEGG: xau:Xaut_3460 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein.
  
   
 0.400
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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