STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2645PFAM: glycosyl transferase group 1; KEGG: gvi:gll2195 probable glycosyl transferase. (398 aa)    
Predicted Functional Partners:
Bind_2653
PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_2481 polysaccharide biosynthesis protein.
 
  
 0.779
Bind_2644
Capsular exopolysaccharide family; KEGG: bja:bll2362 succinoglycan biosynthesis transport protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.648
Bind_1086
PFAM: low temperature requirement A; KEGG: oan:Oant_2126 low temperature requirement A.
  
     0.538
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.481
Bind_2643
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; glycosyl transferase group 1; KEGG: syf:Synpcc7942_1400 endo-1,4-beta-xylanase.
       0.420
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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