STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2665PFAM: integrase family protein; KEGG: oan:Oant_0882 phage integrase family protein; Belongs to the 'phage' integrase family. (407 aa)    
Predicted Functional Partners:
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
  
     0.658
Bind_2770
KEGG: lmo:lmo1968 hypothetical protein.
  
     0.639
Bind_1845
PFAM: Cephalosporin hydroxylase; KEGG: syw:SYNW0087 hypothetical protein.
  
     0.624
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
 
    0.622
Bind_2514
Putative transcriptional regulator, TetR family; KEGG: gdi:GDI0537 hypothetical protein.
  
     0.604
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.598
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
    0.598
Bind_0848
KEGG: bha:BH0727 hypothetical protein.
  
     0.591
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.584
Bind_2360
Hypothetical protein; KEGG: pca:Pcar_0522 ATPase, AAA superfamily.
  
     0.578
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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