Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_2667Protein of unknown function UPF0150; PFAM: CopG domain protein DNA-binding domain protein; protein of unknown function UPF0150; KEGG: nha:Nham_0567 protein of unknown function UPF0150. (132 aa)    
Predicted Functional Partners:
Bind_2666
PFAM: YcfA family protein; KEGG: nha:Nham_0566 YcfA-like.
 
 
 
 0.995
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.573
Bind_2665
PFAM: integrase family protein; KEGG: oan:Oant_0882 phage integrase family protein; Belongs to the 'phage' integrase family.
       0.543
Bind_1543
KEGG: bxe:Bxe_A0212 hypothetical protein.
 
     0.489
Bind_2668
Hypothetical protein.
       0.435
Bind_2669
Hypothetical protein.
       0.435
Bind_0162
KEGG: rpd:RPD_3628 hypothetical protein.
  
     0.434
Bind_3283
TIGRFAM: addiction module antidote protein, HigA family; KEGG: rpc:RPC_3187 plasmid maintenance system antidote protein, XRE family.
 
     0.413
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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