Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2688KEGG: bja:bll6863 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Bind_2686
KEGG: mex:Mext_0632 putative chemotaxis protein precursor.
       0.846
Bind_2687
PFAM: OmpA/MotB domain protein; KEGG: bja:bll6862 flagellar motor protein MotB.
       0.846
Bind_2689
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
       0.846
Bind_2684
PFAM: Lytic transglycosylase catalytic; KEGG: sme:SMc03045 hypothetical protein.
       0.828
Bind_2685
Hypothetical protein; KEGG: dpo:Dpse_GA17283 GA17283-PA.
       0.826
Bind_2690
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.566
Bind_2683
PFAM: peptidase S58 DmpA; KEGG: rpa:RPA3813 peptidase family T4.
       0.468
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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