Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2706TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: xau:Xaut_4303 putative regulatory protein, FmdB family. (79 aa)    
Predicted Functional Partners:
Bind_2401
KEGG: bra:BRADO5430 hypothetical protein.
 
     0.769
Bind_0409
KEGG: rpe:RPE_4534 hypothetical protein.
  
    0.767
Bind_0411
KEGG: pna:Pnap_2347 hypothetical protein.
 
     0.767
Bind_0077
KEGG: xau:Xaut_1175 hypothetical protein.
 
     0.765
Bind_0400
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bra:BRADO5416 conserved hypothetical protein (superfamily of ARM repeat); LRV protein Fes4 cluster in N-terminus.
  
    0.750
Bind_0399
KEGG: xau:Xaut_0114 hypothetical protein.
  
     0.730
Bind_0472
PFAM: response regulator receiver; KEGG: bbt:BBta_5880 putative transcriptional regulatory protein (protein CheY).
  
     0.723
Bind_2402
KEGG: bra:BRADO5401 conserved hypothetical protein (TPR repeat).
  
     0.711
Bind_0395
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: gdi:GDI0432 hypothetical protein.
  
    0.704
Bind_3575
PFAM: amine oxidase; KEGG: mca:MCA2837 amine oxidase family, flavin-containing protein.
  
     0.702
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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