Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2731PFAM: protein of unknown function DUF343; KEGG: mex:Mext_2253 protein of unknown function DUF343; Belongs to the UPF0434 family. (85 aa)    
Predicted Functional Partners:
Bind_2732
Palmitoyl-CoA hydrolase; PFAM: acyl-CoA thioesterase; KEGG: nwi:Nwi_0078 acyl-CoA thioesterase.
       0.532
Bind_2730
PFAM: protein of unknown function DUF763; KEGG: bpt:Bpet1643 hypothetical protein.
       0.438
Bind_1666
PFAM: histidine triad (HIT) protein; KEGG: xau:Xaut_3536 histidine triad (HIT) protein.
  
    0.433
Bind_1784
PFAM: protein of unknown function DUF971; KEGG: bcs:BCAN_A0971 protein of unknown function DUF971.
 
     0.402
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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