Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2758KEGG: sil:SPO0036 hypothetical protein. (348 aa)    
Predicted Functional Partners:
Bind_2760
KEGG: cno:NT01CX_1531 hypothetical protein.
  
  
 0.796
Bind_2757
PFAM: glycosyl transferase group 1; KEGG: rde:RD1_3845 glycosyl transferase, group 1 family protein.
  
    0.785
Bind_2759
PFAM: glycoside hydrolase family 5; KEGG: amr:AM1_1890 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.773
Bind_2746
PFAM: Lytic transglycosylase catalytic; KEGG: sme:SMc01850 hypothetical protein.
  
     0.545
Bind_0450
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.520
Bind_0660
PFAM: ribonuclease T2; KEGG: mex:Mext_0919 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.511
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
  
 
 0.511
Bind_2762
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll2362 succinoglycan biosynthesis transport protein.
  
  
 0.496
Bind_2761
KEGG: bja:bll2363 hypothetical protein.
       0.493
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.450
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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