Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2759PFAM: glycoside hydrolase family 5; KEGG: amr:AM1_1890 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (437 aa)    
Predicted Functional Partners:
Bind_2760
KEGG: cno:NT01CX_1531 hypothetical protein.
       0.790
Bind_2757
PFAM: glycosyl transferase group 1; KEGG: rde:RD1_3845 glycosyl transferase, group 1 family protein.
     
 0.777
Bind_2758
KEGG: sil:SPO0036 hypothetical protein.
       0.773
Bind_2723
KEGG: xau:Xaut_3172 hypothetical protein.
   
   0.603
Bind_0634
KEGG: ngo:NGO0496 hypothetical protein, putative phage associated protein.
   
   0.586
Bind_2726
PFAM: conserved hypothetical protein; KEGG: ngo:NGO0507 hypothetical protein, putative phage associated protein.
   
   0.586
Bind_2727
KEGG: ngo:NGO0506 hypothetical protein, putative phage associated protein.
   
   0.586
Bind_2762
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bja:bll2362 succinoglycan biosynthesis transport protein.
 
   
 0.567
Bind_2761
KEGG: bja:bll2363 hypothetical protein.
       0.493
Bind_0963
KEGG: xau:Xaut_3567 hypothetical protein.
  
 
 0.472
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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