Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2840PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator. (223 aa)    
Predicted Functional Partners:
Bind_2708
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.988
Bind_2841
PFAM: protein of unknown function DUF1403; KEGG: nha:Nham_4582 protein of unknown function DUF1403.
 
     0.879
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 
 0.759
cmk
KEGG: xau:Xaut_1111 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
  
  
 0.604
Bind_2376
PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: azc:AZC_2390 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.569
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.528
Bind_2844
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: azc:AZC_3509 putative methanol dehydrogenase regulator.
       0.505
Bind_2842
TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein.
       0.497
Bind_2843
KEGG: mex:Mext_1458 protein of unknown function DUF58.
       0.497
Bind_2480
PFAM: integrase family protein; KEGG: xau:Xaut_4792 integrase family protein; Belongs to the 'phage' integrase family.
 
     0.458
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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