Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2841PFAM: protein of unknown function DUF1403; KEGG: nha:Nham_4582 protein of unknown function DUF1403. (331 aa)    
Predicted Functional Partners:
Bind_2840
PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator.
 
     0.879
Bind_2480
PFAM: integrase family protein; KEGG: xau:Xaut_4792 integrase family protein; Belongs to the 'phage' integrase family.
 
     0.789
Bind_2842
TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein.
       0.497
Bind_2843
KEGG: mex:Mext_1458 protein of unknown function DUF58.
       0.497
Bind_2844
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: azc:AZC_3509 putative methanol dehydrogenase regulator.
       0.497
Bind_2583
KEGG: rle:pRL70138 putative insertion sequence transposase-like protein.
  
     0.474
Bind_2728
KEGG: rsq:Rsph17025_3714 hypothetical protein.
  
     0.462
Bind_3189
KEGG: oan:Oant_0882 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.452
Bind_2725
KEGG: ngo:NGO0508 hypothetical protein, putative phage associated protein.
  
     0.430
Bind_2839
KEGG: bja:bll5176 hypothetical protein.
       0.421
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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