Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2844PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: azc:AZC_3509 putative methanol dehydrogenase regulator. (333 aa)    
Predicted Functional Partners:
Bind_2843
KEGG: mex:Mext_1458 protein of unknown function DUF58.
  
 0.983
Bind_2842
TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein.
 
     0.932
Bind_3475
KEGG: mex:Mext_1456 hypothetical protein.
 
     0.741
Bind_0928
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpe:RPE_3166 ornithine decarboxylase.
   
 
 0.720
Bind_2845
PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein.
 
     0.609
Bind_0051
KEGG: mex:Mext_1537 hypothetical protein.
  
 
   0.580
Bind_2840
PFAM: chromosome segregation and condensation protein ScpB; KEGG: nha:Nham_4583 putative transcriptional regulator.
       0.505
Bind_2841
PFAM: protein of unknown function DUF1403; KEGG: nha:Nham_4582 protein of unknown function DUF1403.
       0.497
Bind_2846
PFAM: Polynucleotide adenylyltransferase region; KEGG: azc:AZC_3505 putative poly(A) polymerase.
       0.460
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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