Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_2854TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like. (341 aa)    
Predicted Functional Partners:
Bind_0369
PFAM: TonB-dependent receptor; KEGG: azo:azo3844 putative TonB-dependent receptor.
 
   0.783
Bind_2073
PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
 
 
 
 0.756
Bind_1189
KEGG: rpd:RPD_0468 hypothetical protein.
  
     0.752
Bind_2076
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.748
Bind_0529
TIGRFAM: TonB family protein; KEGG: pfo:Pfl_3737 TonB-like.
  
     0.747
Bind_1817
KEGG: cph:Cpha266_2437 hypothetical protein.
  
     0.743
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.736
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
  
     0.734
Bind_0782
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pmt:PMT1382 hypothetical protein.
  
     0.732
Bind_0592
KEGG: ana:alr0587 unknown protein.
  
     0.731
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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