Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_2860PFAM: Carbohydrate-selective porin OprB; KEGG: psb:Psyr_1117 carbohydrate-selective porin OprB. (454 aa)    
Predicted Functional Partners:
Bind_1513
PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_0831 hypothetical protein.
  
     0.525
Bind_2320
PFAM: Fusaric acid resistance protein conserved region; KEGG: azc:AZC_1076 hypothetical protein.
  
     0.520
Bind_2859
PFAM: Aldehyde Dehydrogenase_; KEGG: bmu:Bmul_5161 aldehyde dehydrogenase.
 
     0.520
Bind_2861
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:bll5782 ABC transporter sugar-binding protein.
       0.520
Bind_0134
PFAM: Fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 putative efflux transporter permease; putative fusaric acid resistance pump.
  
     0.488
Bind_1401
KEGG: mex:Mext_4756 fusaric acid resistance protein conserved region.
  
     0.421
Bind_1777
Putative periplasmic ligand-binding sensor protein; KEGG: atc:AGR_C_4127 hypothetical protein.
  
     0.401
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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