Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2861PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:bll5782 ABC transporter sugar-binding protein. (309 aa)    
Predicted Functional Partners:
Bind_2863
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpd:BURPS668_A0286 ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, ATP-binding protein.
 
 0.983
Bind_2862
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: pin:Ping_2807 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.981
Bind_2822
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: smd:Smed_4266 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.901
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.794
Bind_3235
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4428 PAS sensor protein.
   
 
 0.759
Bind_3073
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3209 sugar ABC transporter ATP-binding protein.
 
 
 0.645
Bind_2482
PFAM: PfkB domain protein; KEGG: oan:Oant_0289 PfkB domain protein.
 
  
 0.551
Bind_2860
PFAM: Carbohydrate-selective porin OprB; KEGG: psb:Psyr_1117 carbohydrate-selective porin OprB.
       0.520
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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