STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2864PFAM: ROK family protein; KEGG: rle:RL0488 putative ROK family transcriptional regulator. (411 aa)    
Predicted Functional Partners:
Bind_2866
PFAM: PfkB domain protein; KEGG: xau:Xaut_2416 PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.893
Bind_2865
PFAM: RbsD or FucU transport; KEGG: xau:Xaut_2417 RbsD or FucU transport; Belongs to the RbsD / FucU family.
 
     0.875
Bind_2463
PFAM: extracellular solute-binding protein family 1; KEGG: rle:RL4218 putative mannitol-binding component of ABC transporter.
 
  
 0.630
Bind_2459
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: atc:AGR_L_830 mannitol 2-dehydrogenase (MDH).
 
   
 0.602
Bind_2462
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4217 putative mannitol transmembrane permease component of ABC transporter.
 
   
 0.600
Bind_2461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL4216 putative mannitol transmembrane permease component of ABC transporter.
 
   
 0.590
aroB
Shikimate kinase., 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
     
 0.541
Bind_3014
KEGG: mex:Mext_2713 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
     
 0.536
Bind_2766
PFAM: regulatory protein LacI; KEGG: rle:pRL110623 putative transcriptional regulator.
 
  
 0.488
zwf-2
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.477
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.