Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2881KEGG: atc:AGR_C_479 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Bind_2880
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: atc:AGR_C_478 hypothetical protein.
 
     0.871
Bind_1773
PFAM: N-acylglucosamine 2-epimerase; KEGG: rle:RL3363 putative mannose-6-phosphate isomerase.
  
     0.590
Bind_0137
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.
  
     0.505
Bind_2948
KEGG: rpb:RPB_2974 hypothetical protein.
  
     0.491
Bind_2763
KEGG: rsp:RSP_2396 hypothetical protein.
  
     0.469
Bind_1104
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0228 RNA polymerase sigma factor, sigma-70 family.
  
     0.417
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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