Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_2902KEGG: rpc:RPC_1636 xanthine dehydrogenase accessory factor. (250 aa)    
Predicted Functional Partners:
Bind_2903
PFAM: protein of unknown function DUF182; KEGG: mex:Mext_1055 protein of unknown function DUF182.
     0.995
Bind_2901
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: bbt:BBta_5312 hypothetical protein.
  
 0.992
Bind_2920
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bbt:BBta_5972 isoquinoline 1-oxidoreductase alpha subunit.
 
  
 0.812
Bind_3368
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: cak:Caul_3606 (2Fe-2S)-binding domain protein.
 
  
 0.811
Bind_3367
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cak:Caul_3605 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
  
 0.686
Bind_2919
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bbt:BBta_5973 isoquinoline 1-oxidoreductase beta subunit.
 
  
 0.653
Bind_2900
PFAM: Usg family protein; KEGG: bja:bsl5624 hypothetical protein.
 
     0.478
Bind_2904
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: reu:Reut_A1692 alpha/beta hydrolase.
       0.448
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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