STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2905TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cya:CYA_2030 TonB family protein. (215 aa)    
Predicted Functional Partners:
Bind_2092
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport.
   
 
 0.613
Bind_0527
TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_1617 protein TolR.
 
 
 0.546
Bind_2145
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gbe:GbCGDNIH1_1104 TolR protein.
 
 
 0.543
Bind_3062
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xau:Xaut_2279 biopolymer transport protein ExbD/TolR.
 
 
 0.537
Bind_2906
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bms:BR0700 short chain dehydrogenase.
       0.515
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.498
Bind_0234
TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bme:BMEI0364 biopolymer transport ExbD protein.
  
 
 0.468
Bind_0272
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_4762 biopolymer transport protein ExbD/TolR.
  
 
 0.468
Bind_2327
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor.
 
 
 0.456
Bind_0235
TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: xau:Xaut_4273 TonB-system energizer ExbB type-1.
  
 
 0.434
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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