STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2945PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region. (171 aa)    
Predicted Functional Partners:
Bind_2946
KEGG: nfa:nfa53680 putative methylated-DNA:protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.
       0.655
Bind_2944
Helix-turn-helix type 11 domain protein; PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bja:blr7860 hypothetical protein.
       0.549
Bind_2947
KEGG: pla:Plav_1985 hypothetical protein.
       0.534
Bind_3118
PFAM: BolA family protein; KEGG: azc:AZC_2232 BolA-like protein; Belongs to the BolA/IbaG family.
  
     0.402
Bind_2579
KEGG: bxe:Bxe_A1722 predicted metal-dependent hydrolase.
  
    0.400
Bind_3341
PFAM: cyclase family protein; KEGG: art:Arth_3556 cyclase family protein.
  
    0.400
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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