Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2947KEGG: pla:Plav_1985 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Bind_2946
KEGG: nfa:nfa53680 putative methylated-DNA:protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.
       0.694
Bind_2944
Helix-turn-helix type 11 domain protein; PFAM: protein of unknown function UPF0074; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: bja:blr7860 hypothetical protein.
 
     0.633
Bind_1489
KEGG: sal:Sala_0092 hypothetical protein.
  
     0.597
Bind_2945
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region.
       0.534
Bind_2324
KEGG: bra:BRADO1841 hypothetical protein.
  
     0.445
Bind_2948
KEGG: rpb:RPB_2974 hypothetical protein.
       0.416
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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