Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_2951KEGG: bxe:Bxe_A1711 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Bind_2949
PFAM: regulatory protein MarR; KEGG: gdi:GDI0347 putative transcriptional regulator, family MarR.
 
     0.907
Bind_2952
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: bam:Bamb_3727 major facilitator superfamily MFS_1.
 
     0.876
Bind_2950
PFAM: isochorismatase hydrolase; KEGG: gdi:GDI0348 isochorismatase hydrolase.
 
     0.869
Bind_1489
KEGG: sal:Sala_0092 hypothetical protein.
  
     0.556
Bind_1281
KEGG: bur:Bcep18194_B0205 hypothetical protein.
  
     0.545
Bind_3435
KEGG: pnu:Pnuc_0361 conserved hypothetical secreted protein.
  
     0.441
Bind_2893
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: mes:Meso_0497 phage transcriptional regulator, AlpA.
  
     0.433
Bind_3610
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: aav:Aave_0579 transcriptional regulator/antitoxin, MazE.
  
     0.413
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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