STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3000KEGG: bra:BRADO3242 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Bind_3004
PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3241 major facilitator superfamily (MFS) transporter.
 
     0.730
Bind_1305
KEGG: gdi:GDI0324 hypothetical protein.
  
     0.689
Bind_3002
PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mex:Mext_3966 arsenical pump membrane protein.
 
     0.668
Bind_3001
Hypothetical protein.
       0.584
Bind_3256
KEGG: gox:GOX0013 hypothetical protein.
  
     0.547
Bind_3003
KEGG: gbe:GbCGDNIH1_1401 hypothetical membrane spanning protein.
       0.519
Bind_0118
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.514
Bind_3661
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.482
Bind_2151
PFAM: outer membrane efflux protein; KEGG: gdi:GDI1515 putative type I secretion outer membrane protein, TolC.
  
     0.467
Bind_2121
KEGG: gdi:GDI0861 putative major royal jelly-like protein.
  
     0.463
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.