Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3004PFAM: major facilitator superfamily MFS_1; KEGG: bra:BRADO3241 major facilitator superfamily (MFS) transporter. (423 aa)    
Predicted Functional Partners:
Bind_3002
PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: mex:Mext_3966 arsenical pump membrane protein.
 
    0.797
Bind_3003
KEGG: gbe:GbCGDNIH1_1401 hypothetical membrane spanning protein.
       0.773
Bind_3000
KEGG: bra:BRADO3242 hypothetical protein.
 
     0.729
Bind_3001
Hypothetical protein.
       0.682
Bind_2984
PFAM: protein of unknown function DUF892; KEGG: azc:AZC_2285 hypothetical protein.
  
     0.414
Bind_2287
PFAM: protein of unknown function DUF892; KEGG: xau:Xaut_3218 protein of unknown function DUF892.
  
     0.401
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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