Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3023KEGG: azc:AZC_1536 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Bind_3022
KEGG: bch:Bcen2424_5289 hypothetical protein.
 
     0.900
Bind_0075
KEGG: reu:Reut_B4493 hypothetical protein.
  
     0.707
Bind_2363
PFAM: Na+/solute symporter; KEGG: bja:bll5890 monocarboxylic acid permease.
  
     0.698
Bind_0076
PFAM: Na+/solute symporter; KEGG: bja:bll5890 monocarboxylic acid permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.695
Bind_3513
KEGG: xau:Xaut_3280 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.453
Bind_3024
PFAM: protein of unknown function DUF983; KEGG: pla:Plav_2829 protein of unknown function DUF983.
       0.420
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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