Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3041PFAM: NLP/P60 protein; KEGG: mex:Mext_0858 NLP/P60 protein. (288 aa)    
Predicted Functional Partners:
Bind_3040
PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rpc:RPC_3720 leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.802
Bind_0363
PFAM: protein of unknown function DUF214; KEGG: mex:Mext_2864 protein of unknown function DUF214.
   
 
 0.699
Bind_2931
KEGG: mex:Mext_2287 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
    
 
 0.695
Bind_2192
TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpa:RPA2669 hypothetical protein.
  
   
 0.578
Bind_0827
KEGG: bja:bll0464 hypothetical protein.
  
     0.570
rpmI
PFAM: ribosomal protein L35; KEGG: bbt:BBta_0216 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.535
Bind_0051
KEGG: mex:Mext_1537 hypothetical protein.
 
  
 0.508
Bind_1037
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2'-deoxycytidine 5'-triphosphate deaminase.
  
     0.471
Bind_1656
PFAM: protein of unknown function DUF1491; KEGG: rpe:RPE_1874 protein of unknown function DUF1491.
  
     0.466
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.454
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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