Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3051PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Bind_3052
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404.
    0.959
Bind_3281
PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cak:Caul_2638 protein of unknown function DUF404.
 
    0.909
Bind_3280
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3752 transglutaminase-like domain.
  
 0.874
Bind_2469
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cak:Caul_2635 transglutaminase domain protein.
 
  
 0.827
Bind_0886
PFAM: transglutaminase domain protein; KEGG: rle:RL1406 putative transglutaminase family protein.
 
  
 0.748
Bind_2470
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3754 transglutaminase-like domain.
 
  
 0.713
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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