Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_3060PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: nha:Nham_0727 hemolysin activation/secretion protein-like. (590 aa)    
Predicted Functional Partners:
Bind_3059
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: nha:Nham_0725 filamentous haemagglutinin-like.
 
 
 0.920
Bind_1603
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: nha:Nham_0943 filamentous haemagglutinin-like.
 
 
 0.834
Bind_3063
TIGRFAM: TonB family protein; KEGG: nha:Nham_0730 TonB-like.
 
     0.784
Bind_3062
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xau:Xaut_2279 biopolymer transport protein ExbD/TolR.
 
     0.715
Bind_3061
TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_0728 MotA/TolQ/ExbB proton channel.
 
    0.694
Bind_1949
KEGG: bbt:BBta_5892 hypothetical protein.
 
  
 0.606
Bind_2724
KEGG: ngo:NGO0510 hypothetical protein, putative phage associated protein.
  
     0.599
Bind_0593
Permease-like protein; KEGG: mag:amb3714 predicted permease.
  
     0.589
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.577
Bind_0864
KEGG: bur:Bcep18194_C6733 hypothetical protein.
  
     0.539
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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