Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_3086PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: fre:Franean1_2520 taurine dioxygenase. (290 aa)    
Predicted Functional Partners:
Bind_3087
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: swi:Swit_2508 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein.
 
    0.801
Bind_0847
PFAM: Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: mes:Meso_2581 condensation domain.
 
  
 0.685
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.621
Bind_3088
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
  
    0.556
Bind_1113
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
     
 0.434
Bind_2975
PFAM: Phytanoyl-CoA dioxygenase; KEGG: sal:Sala_2590 phytanoyl-CoA dioxygenase.
  
  
 0.403
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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